PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC60080_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 90aa    MW: 9743.83 Da    PI: 9.1187
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC60080_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67e-0638751355
                 HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 R+++++ +  Lr+++P       + ++ a++L +Av+Y+ksL+
  RrC60080_p1 38 RREMKKMMGVLRRIVPGG-----EEMNTASVLDEAVQYLKSLK 75
                 889999**********95.....69****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2362574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-73881IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-83884IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-53879No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
DGGDSEEVRS TARNSSYGYN KQSLSGSASS CNNEGKGRRE MKKMMGVLRR IVPGGEEMNT  60
ASVLDEAVQY LKSLKLEAQK LGVGHFSNQS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0080307e-75AC008030.4 Arabidopsis thaliana chromosome I BAC F1N18 genomic sequence, complete sequence.
GenBankAC0224557e-75AC022455.5 Arabidopsis thaliana chromosome 1 BAC T1P2 genomic sequence, complete sequence.
GenBankAF3616077e-75AF361607.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBankAK2303747e-75AK230374.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL24-26-M05.
GenBankAK3187027e-75AK318702.1 Arabidopsis thaliana AT1G29950 mRNA, complete cds, clone: RAFL07-45-G13.
GenBankAY0748437e-75AY074843.1 Arabidopsis thaliana F1N18.24/F1N18.24 mRNA, complete cds.
GenBankCP0026847e-75CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013650577.11e-40PREDICTED: transcription factor bHLH144-like
SwissprotQ9ASX96e-25BH144_ARATH; Transcription factor bHLH144
TrEMBLA0A078EFN23e-40A0A078EFN2_BRANA; BnaC07g09350D protein
STRINGBra030184.1-P7e-39(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61951626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.23e-26bHLH family protein